Somabha Mukherjee, Divyansh Agarwal, Nancy Zhang, Bhaswar B. Bhattacharya (2022), Distribution-free multisample test based on optimal matching with applications to single cell genomics, Journal of the American Statistical Association, 117 (538), pp. 627-638.
Zilu Zhou, Chengzhong Ye, Jingshu Wang, Nancy Zhang (2020), Surface protein imputation from single cell transcriptomes by deep neural networks, Nature Communications, 11 (651), pp. 1-10.
Zilu Zhou, Bihui Xu, Andy Minn, Nancy Zhang (2020), DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing, Genome Biology, 21 (10), pp. 1-15.
Son Nguyen, Claire Deleage, Samuel Darko, Amy Ransier, Duc P. Truong, Divyansh Agarwal, Alberto Sada Japp, Vincent H. Wu, Leticia Kuri-Cervantes, Mohamed Abdel-Mohsen, Perla M. Del Rio Estrada, Yuria Ablanedo-Terrazas, Emma Gostick, James A. Hoxie, Nancy Zhang, Ali Naji, Gustavo Reyes-Teran, Jacob D. Estes, David A. Price, Daniel C. Douek, Steven G. Deeks, Marcus Buggert, Michael R. Betts (2019), Elite control of HIV is associated with distinct functional and transcriptional signatures in lymphoid tissue CD8+ T cells, Science Translational Medicine , 11(523): eaax4077 ().
Divyansh Agarwal and Nancy Zhang (2019), Semblance: An empirical similarity kernel on probability spaces, Science Advances, 5(12): eaau9630 ().
Diana Pauly, Divyansh Agarwal, Nicholas Dana, Nicole Schafer, Josef Biber, Kirsten A. Wunderlich, Yassin Jabri, Tobias Straub, Nancy Zhang, Avneesh K. Gautam, Bernhard H.F. Weber, Stefanie M. Hauck, Mijin Kim, Christine A. Curcio, Dwight Stambolian, Mingyao Li, Antje Grosch (2019), Cell-Type-Specific Complement Expression in the Healthy and Diseased Retina, Cell Reports, 29 (9), pp. 2835-2848.
Nancy Zhang and Mo Huang (Working), Reply to “Issues arising from benchmarking single-cell RNA sequencing imputation methods”.
Jingshu Wang, Divyansh Agarwal, Mo Huang, Gang Hu, Zilu Zhou, Chengzhong Ye, Nancy Zhang (2019), Data denoising with transfer learning in single-cell transcriptomics, Nature Methods, 16 (), pp. 875-878.
Joseph L. Benci, Lexus R. Johnson, Ruth Choa, Yuanming Xu, Jingya Qiu, Zilu Zhou, Bihui Xu, Darwin Ye, Katherine L. Nathanson, Carl H. June, John Wherry, Nancy Zhang, Hemant Ishwaran, Matthew D. Hellmann, Jedd D. Wolchok, Taku Kambayashi, Andy J. Minn (2019), Opposing Functions of Interferon Coordinate Adaptive and Innate Immune Responses to Cancer Immune Checkpoint Blockade, Cell, 178 (4), pp. 933-948.
Qingyuan Zhao, Jingshu Wang, Zhen Miao, Nancy Zhang, Sean Hennessy, Dylan Small, Daniel J. Rader, The role of lipoprotein subfractions in coronary artery disease: A Mendelian randomization study.